Sains Malaysiana 47(11)(2018): 2637–2645
http://dx.doi.org/10.17576/jsm-2018-4711-06
Genetic Diversity among Tomato Accessions
based on Agro-Morphological Traits
(Kepelbagaian Genetik
antara Penerimaan Tomato berdasarkan Ciri Agro
Morfologi)
IZHAR HUSSAIN1*,
SHER
ASLAM
KHAN1,
SAJID
ALI2,
ABID
FARID1,
NAUSHAD
ALI1,
SARDAR
ALI1,
SHAH
MASAUD1,
IJAZ
HUSSAIN1,
KAMRAN
AZEEM1
& HANEEF RAZA3
1Department of Agricultural Sciences,
University of Haripur, 22620, Pakistan
2Institute of Biotechnology and Genetic
Engineering, University of Agriculture Peshawar, KPK, Pakistan
3Department of plant breeding and
Genetic, University of Agriculture Peshawar, KPK, Pakistan
Received:
19 December 2017/Accepted: 28 June 2018
ABSTRACT
It is of great importance to
know about the genetic diversity, conservation and classification
for further utilization of tomato germplasm resources. Therefore,
40 tomato accessions were evaluated on the basic of agro-morphological
traits for genetic diversity in 2014. The experiment was conducted
at Agricultural Research Farm, University of Haripur and farmer
field in Swabi, Khyber Pakhtunkhwa, Pakistan. Principal component
analysis showed that five out of 27 principal components with
an eigenvalue above 1.0 were considered for 74.10% of the total
variance. The major contributing traits in variations were days
to flowering (DFL),
days to fruiting (DFR), fruit size (FS),
fruit weight plant-1 (FW),
yield plot-1 (YPP), yield hectare-1 (YPH),
leaf length (LL), predominant fruit shape (PDFS),
fruit length (FL), fruit width (FWidth), clusters plant-1 (CPP),
fruits plant-1 (FPP) and plant height (PH).
The scattered plot of the PC’s revealed that the accessions were
scattered in all the quarters, which is also a representative
that high level of genetic variability was present. FW and FL were
positively correlated with YPH. However, the remaining yield components
indirectly contributed YPH. Cluster analysis divided
40 accessions into four main clusters (I, II, III and IV), each
of which having 12, 11, 07 and 10 accessions. The accessions in
clusters I and II were statistically similar and performed better
in terms of yield and yield related traits. Grouping into different
clusters was associated with their agro-morphological differences.
These results could be serving as a useful resource for further
characterization, preservation and breeding programs.
Keywords: Accessions; analysis;
cluster; diversity; tomato
ABSTRAK
Adalah penting untuk mengetahui
tentang kepelbagaian genetik, pemuliharaan dan pengelasan bagi
penggunaan sumber germplasma tomato. Oleh itu, 40 penerimaan tomato
telah dinilai berasaskan ciri agro morfologi bagi kepelbagaian
genetik pada tahun 2014. Uji kaji ini telah dijalankan di Ladang
Penyelidikan Pertanian, Universiti Haripur dan padang petani di
Swabi, Khyber Pakhtunkhwa, Pakistan. Analisis komponen utama menunjukkan
bahawa lima daripada 27 komponen utama dengan nilai eigen melebihi
1.0 telah diambil kira 74.10% daripada jumlah varians. Ciri utama
penyumbang dalam variasi ialah hari untuk berbunga (DFL),
hari untuk berbuah (DFR), saiz buah (FS),
berat pokok buah-buahan-1 (FW)
hasil plot-1 (YPP), hasil hektar-1 (YPH),
panjang daun (LL), bentuk utama buah-buahan (PDF),
panjang buah (FL), lebar buah (FWidth), kelompok tanaman-1 (CPP),
buah tanaman-1 (FPP) dan ketinggian tanaman (PH).
Plot PC yang berselerak menunjukkan penerimaan adalah berselerak
di dalam semua bahagian yang mewakili kepelbagaian genetik tahap
tinggi telah berlaku. FW dan FL berkorelasi
secara positif dengan YPH. Walau bagaimanapun, komponen hasil
baki secara tidak langsung menyumbang kepada YPH.
Analisis kelompok membahagikan 40 penerimaan kepada empat kelompok
utama (I, II, III dan IV) dengan setiap daripadanya mempunyai
12, 11, 07 dan 10 penerimaan. Penerimaan untuk kelompok I dan
II adalah sama secara statistik dan menunjukkan hasil yang lebih
baik dari sudut penghasilan dan ciri berdasarkan penghasilan.
Pengelompokan kepada kelompok yang berlainan dikaitkan dengan
perbezaan agro morfologi mereka. Keputusan kajian ini sangat membantu
sebagai satu sumber yang berguna untuk kesinambungan pencirian,
pemeliharaan dan program pembiakbakaan.
Kata kunci: Analisis; kluster; kepelbagaian; penerimaan; tomato
REFERENCES
Basavaraj, N. &
Dhotre, M. 2012. Correlation and path co-efficient studies in
tomato. Asian J. Hortic. 7(2): 379-384.
Bernousi, I., Emami,
A., Tajbakhsh, M., Darvishzadeh, R. & Henareh, M. 2011. Studies
on genetic variability and correlation among the different traits
in Solanum lycopersicum L. Not. Bot. Hort. Agrobot.
Cluj. 39(1): 152-158.
Bhattarai, K.,
Louws, F.J., Williamson, J.D. & Panthee, D.R. 2016. Diversity
analysis of tomato genotypes based on morphological traits with
commercial breeding significance for fresh market production in
eastern USA. Austr. J. Crop Sci. 10(8): 1098-1103.
Cebolla-Cornejo,
J., Rosello, S. & Nuez, F. 2013. Phenotypic and genetic diversity
of Spanish tomato landraces. Scientia Hortic. 162: 150-164.
Chernet, S., Belew,
D. & Abay, F. 2014. Genetic diversity studies for quantitative
traits of tomato (Solanum lycopersicon L.) genotypes in
Western Tigray, Northern Ethiopia. J. Plant Breed.
Crop Sci. 6(9): 105-113.
Crossa, J. &
Franco, D.J. 2004. Statistical methods for classifying genotypes.
Euphytica 137: 19-37.
De-Souza, L.M.,
Melo, P.C.T., Luders, R.R. & Melo, A.M. 2012. Correlations
between yield and fruit quality characteristics of fresh market
tomatoes. Hortic. Bras. 30(4): 627-631.
Dhankhar, S.K.
& Dhankhar, B.S. 2006. Variability, heritability, correlation
and path-coefficient studies in tomato. Haryana J. Hortic.
Sci. 35(1/2): 179.
FAOSTAT. 2015.
Statistical Databases. Food and Agriculture
Organization. Accessed by 10 April 2017 at http://faostat3. fao.org/home/E.
Flint-Garcia, S.A.,
Thuillet, A.C., Yu, J.M., Pressoir, G., Romero, S.M., Mitchell,
S.E., Doebley, J., Kresovich, S., Goodman, M.M. & Buckler,
E.S. 2005. Maize association population: A high-resolution platform
for quantitative trait locus dissection. Plant J. 44(6):
1054-1064.
Hanson, P., Chen,
J.T., Kuo, C.G., Morris, R. & Opena, R.T. 2000. Suggested
cultural practices for tomato. Int. Coop. Guide AVRDC #00-508.
pp. 1-8.
Harer, P.N., Lad,
D.B. & Bhor, T.J. 2002. Correlation and path analysis studies
in tomato. J. Maharashtra Agric. Uni. 27(3):
302-303.
Haydar, A., Mandal,
M.A., Ahmed, M.B., Hannan, M.M., Karim, R., Razvy, M.A., Roy,
U.K. & Salahin, M. 2007. Studies on genetic variability and
interrelationship among the different traits in tomato (Lycopersicon
esculentum Mill.). Middle-East J. Sci. Res.
2(3-4): 139-142.
Henareh, M., Dursun,
A. & Mandoulakani, B.A. 2015. Genetic diversity in tomato
landraces collected from Turkey and Iran revealed by morphological
characters. Acta. Sci.
Polonorum- Hortorum Cultus 14: 87-96.
Hu, X.R., Wang,
H., Chen, J. & Yang, W.C. 2012. Genetic diversity of Argentina
tomato varieties revealed by morphological traits, simple sequence
repeat, and single nucleotide polymorphism markers. Pak.
J. Bot. 44: 485-492.
Huang, X.H., Zhao,
Y., Wei, X.H., Li, C.Y., Wang, A., Zhao, Q., Li, W.J., Guo, Y.L.,
Deng, L.W., Zhu, C.R., Fan, D.L., Lu, Y.Q., Weng, Q.J., Liu, K.Y.,
Zhou, T.Y., Jing, Y.F., Si, L.Z., Dong, G.J., Huang, T., Lu, T.T.,
Feng, Q., Qian, Q., Li, J.Y. & Han, B. 2012. Genome-wide association
study of flowering time and grain yield traits in a worldwide
collection of rice germplasm. Nat. Genet. 44(1):
32-53.
Huang, X., Wei, X., Sang, T., Zhao,
Q., Feng, Q., Zhao, Y., Li, C., Zhu, C., Lu, T., Zhang, Z., Li,
M., Fan, D., Guo, Y., Wang, A., Wang, L., Deng, L., Li, W., Lu,
Y., Weng, Q., Liu, K., Huang, T., Zhou, T., Jing, Y., Li, W.,
Lin, Z., Buckler, E.S., Qian, Q., Zhang, Q.F., Li, J. & Han,
B. 2010. Genome-wide association studies
of 14 agronomic traits in rice landraces. Nat. Genet.
42(11): 961-976.
Iqbal, Q., Saleem, M.Y., Hameed,
A. & Asghar, M. 2014. Assessment of genetic divergence in
tomato through agglomerative hierarchical clustering and principal
component analysis. Pak. J. Bot. 46(5): 1865-1870.
Islam, B.M.R., Ivy, N.A., Rasul,
M.G. & Zakaria, M. 2010. Character association and path analysis
of exotic tomato (Solanum lycopersicum L.) genotypes. Bangl.
J. Plant Breed. Genet. 23(1): 13-18.
Jackson, J. 1991. A User’s Guide
to Principal Components. New York: John Wiley & Sons.
Khadivi-Khub, A., Zamani, Z. &
Bouzari, N. 2008. Evaluation of genetic diversity in some Iranian
and foreign sweet cherry cultivars by using RAPD molecular markers
and morphological traits. Hortic. Environ. Biotechnol.
49: 188- 196.
Kumar, R., Mishra, N.K., Singh,
J., Rai, G.K., Verma, A. & Rai, M. 2006. Studies on yield
and quality traits in tomato (Solanum lycopersicon Mill.).
Veg. Sci. 33(2): 126-132.
Mazzucato, A., Papa, R., Bitocchi,
E., Mosconi, P., Nanni, L., Negri, V., Picarella, M.E., Siligato,
F., Soressi, G.P., Tiranti, B. & Veronesi, F. 2008. Genetic
diversity, structure and markertrait association in a collection
of Italian tomato (Solanum lycopersicum L.) landraces.
Theor. Appl. Genet. 116: 657-669.
MNFSR. 2014-2015. Fruits, Vegetables and Condiments Statistics
of Pakistan. Government of Pakistan, Ministry of National
Food Security and Research. p. 69.
Mohammadi, S.A. & Prasanna,
B.M. 2003. Analysis of genetic diversity in crop plants - salient
statistical tools and considerations. Crop Sci. 43: 1235-1248.
Mohanty, B.K. 2002a. Studies on
variability, heritability, interrelationship and path analysis
in tomato. Anl. Agric. Res. 2(1): 65-69.
Mohanty, B.K. 2002b. Genetic variability,
correlation and path coefficient studies in tomato. Ind.
J. Agric. Res, 37(1): 68-71.
Nikoumanesh, K., Ebadi, A., Zeinalabedini,
M. & Gogorcena, Y. 2011. Morphological and molecular variability
in some Iranian almond genotypes and related Prunus species
and their potentials for rootstock breeding. Sci. Hortic.
129: 108-118.
Nwosu, D.J., Onakoya, O.A., Okere,
A.U., Babatunde, A.O. & Popoola, A.F. 2014. Genetic variability
and correlations in rainfed tomato (Solanum spp.) accessions
in Ibadan, Nigeria. Greener J. Agric. Sci.
4(5): 211-219.
Prasad, V.S.R.K. & Rai, M. 1999.
Genetic variation, component association and direct and indirect
selections in some exotic tomato accessions. Ind. J.
Hortic. 56(3): 262-266.
Rashid, M., Cheema, A.A. & Ashraf,
M. 2008. Numerical analysis of variation among basmati rice mutants.
Pak. J. Bot. 40(6): 2413-2417.
Reddy, B.R., Reddy, M.P., Begum,
H. & Sunil, N. 2013. Genetic diversity studies in tomato (Solanum
lycopersicum L.). IOSR J. Agric. Veterinary
Sci. 4(4): 53-55.
Reif, J.C., Melchinger, A.E. &
Frisch, M. 2005. Genetical and mathematical properties of similarity
and dissimilarity coefficients applied in plant breeding and seed
bank management. Crop Sci. 45: 1-7.
Singh, A.K. 2009. Genetic variability,
heritability and genetic advance studies in tomato under cold
arid region of Ladakh. Ind. J. Hortic. 66(3):
400-403.
Singh, A.K. 2007. Correlation and
path coefficient studies in tomato under cold arid conditions
of Ladakh. Haryana J. Hortic. Sci. 36(3/4):
346-347.
Sneath, P.H. & Sokal, R.R. 1973.
Numerical Taxonomy: The Principles and Practice of Numerical
Classification. San Francisco, USA: W.F. Freeman & Co.
Steel, R.G.D. & Torrie, J.H.
1980. Principles and Procedures of Statistics. 2nd ed.
New York: McGraw-Hill.
Sudre, C.P., Leonardecz, E., Rodrigues,
R., Junior, A.T.D.A., Moura, M.D.C.L. & Gonçalves, L.S.A.
2007. Genetic resources of vegetable crops: A survey in the Brazilian
germplasm collections pictured through papers published in the
journals of the Brazilian Society for Horticultural Science. Hortic.
Bras. 25: 496-503.
Terzopoulos, P.J. & Bebeli,
P.J. 2008. DNA and morphological diversity of selected Greek tomato
(Solanum lycopersicum L.) landraces. Sci. Hortic.
116: 354-361.
Thornsberry, J.M., Goodman, M.M.,
Doebley, J., Kresovich, S., Nielsen, D. & Buckler, E.S. 2001.
Dwarf8 polymorphisms associate with variation in flowering time.
Nat. Genet. 28(3): 286-289.
Yi, S-S., Jatoi, S.A., Fujimura,
T., Yamanaka, S., Watanabe, J. & Watanabe, K.N. 2008. Potential
loss of unique genetic diversity in tomato landraces by genetic
colonization of modern cultivars at a non-center of origin. Plant
Breed. 127: 189-196.
Zhou, R., Wu, Z., Cao, X. &
Jiang, F.L. 2015. Genetic diversity of cultivated and wild tomatoes
revealed by morphological traits and SSR markers. Genet.
Mol. Res. 14: 13868-13879.
*Corresponding author;
email: izharhussain29@gmail.com