Sains Malaysiana 43(5)(2014): 697–705
In vitro and In vivo Evaluation of Streptomyces Suppressions
against Anthracnose in
Chili Caused by Colletotrichum
(Penilaian Penindasan Streptomyces Secara In vitro dan In vivo terhadap Antraknos dalam Cili Disebabkan oleh Colletotrichum)
PEDRAM SHAHBAZI*, MD. YUSOFF MUSA, GEOK YUAN ANNIE TAN, FARHAT AHMADI AVIN, WEE FEI AARON TEO
& VIKINESWARY SABARATNAM
Institute of Biological Sciences, Faculty of Science, University
of Malaya, 50603 Kuala Lumpur
Malaysia
Received: 8 January 2013/Accepted: 4 September 2013
ABSTRACT
The isolation of 66 streptomycetes from rhizosphere soil of chili plants was done for their
inhibitory activities against three different dominant species of Colletotrichum namely C. acutatum,
C. gloeosporioides and C. capsici.
Twenty one streptomycetes strains were active against
at least one of the Colletotrichum species. In
addition, ten strains that inhibited the in vitro growth of Colletotrichum species showed chitinase activity. Strain P42, which displayed the highest inhibitory activity against
all three anthracnose fungi species and high chitinase activity was tested as biological control agent in a greenhouse study. The
strain successfully controlled chili anthracnose disease by significantly
reducing the disease severity. Phylogenetic analysis of the 16S rRNA gene
sequences showed that strain P42 belongs to the Streptomyces rochei clade. The results of the current study showed
that rhizosphere-derived soil of chili plants is an
important source of bioactive streptomycetes which
are antagonistic against Colletotrichum.
Keywords: Biological control; chili pepper; Colletotrichum; inhibitory activity; Streptomyces
ABSTRAK
Enam puluh enam pencilan streptomiset daripada tanah rizosfera tumbuhan cili telah dilakukan saringan aktiviti antimikrob terhadap tiga spesies kulat Colletotrichum yang berbeza iaituC. acutatum, C. gloeosporioides danC. capsici. Dua puluh satu strain streptomiset didapati aktif terhadap sekurang-kurangnya salah satu spesiesColletotrichum. Tambahan pula, sepuluh terikan streptomiset yang mampu merencat pertumbuhanColletotrichum secara in
vitro juga menunjukkan aktiviti kitinase. Strain
P42 yang memaparkan aktiviti perencatan tertinggi terhadap ketiga-tiga spesies kulat kajian dan juga mempunyai aktiviti kitinase tinggi diuji sebagai agen kawalan biologi dalam kajian rumah hijau. Strain P42 ini berjaya mengawal penyakit antraknos cili. Analisis filogenetik gen jujukan 16S rRNA menunjukkan bahawa strain P42 kepunyaan kladStreptomyces rochei. Keputusan kajian ini memberikan gambaran bahawa tanah rizosfera tumbuhan cili adalah sumber penting streptomiset bioaktif yang berupaya mengawal pertumbuhanColletotrichum.
Kata kunci: Cili padi; Colletotrichum; kawalan biologi; saringan aktiviti; Streptomyces
REFERENCES
Bell, A.A. & Mace, M.E. 1981. Biochemistry and physiology of resistance. In Fungal Wilt
Diseases of Plants, edited by Mace, M. New York: Academic Press.
Berdy, J. 2005. Bioactive microbial
metabolites. The Journal of Antibiotics 58(1): 1-26.
Cho, S.J., Lee, S.K., Cha,
B.J., Kim, Y.H. & Shin, K.S. 2003. Detection and characterization of the Gloeosporium gloeosporioidesgrowth inhibitory compound iturin A from Bacillus subtilis strain KS03. FEMS Microbiology Letters 223(1): 47-51.
Cook, R.J. & Baker, K.F. 1983. The Nature
and Practice of Biological Control of Plant Pathogens. USA: American Phytopathological Society.
Crawford, D.L., Lynch,
J.M., Whipps, J.M. & Ousley,
M.A. 1993. Isolation
and characterization of actinomycete antagonists of a
fungal root pathogen. Applied and Environmental Microbiology 59(11):
3899-3905.
De Boer, W., Klein Gunnewiek, P.J.A., Lafeber, P., Janse, J.D., Spit, B.E. & Woldendorp,
J.W. 1998. Anti-fungal properties of chitinolytic dune soil bacteria. Soil Biology and
Biochemistry 30(2): 193-203.
De, S. & Chandra, A.L.
1983. A-19, a
new antifungal antibiotic. Indian Journal of Experimental Biology 21:
31-33.
Demain, A.L. & Fang, A. 1995. Emerging concepts of
secondary metabolism in actinomycetes. Actinomycetologica 9(2): 98-117.
El-Tarabily,
K., Soliman, M., Nassar,
A., Al-Hassani, H., Sivasithamparam,
K., McKenna, F. & Hardy, G.E.S.T. 2000. Biological control of Sclerotinia minor using a chitinolytic bacterium and actinomycetes. Plant
Pathology 49(5): 573- 583.
Ezziyyani, M., Requena, M.E., Egea-Gilabert,
C. & Candela, M.E. 2007. Biological control of Phytophthora root rot of pepper using Trichoderma harzianumand Streptomyces rocheiin combination. Journal
of Phytopathology 155(6): 342-349.
Freeman, S., Katan, T. & Shabi, E. 1998. Characterization of Colletotrichum species responsible for
anthracnose diseases of various fruits. Plant Disease 82(6):
596-605.
Getha, K. & Vikineswary,
S. 2002. Antagonistic effects of Streptomyces violaceusniger strain G10 on Fusarium oxysporumf. cubense race 4: Indirect evidence for the role of antibiosis in the antagonistic
process. Journal of Industrial Microbiology & Biotechnology 28(6):
303-310.
Gupta, R., Saxena, R., Chaturvedi, P. & Virdi, J. 1995. Chitinase production by Streptomyces viridificans: Its potential in fungal cell wall lysis. Journal of Applied Microbiology 78(4):
378-383.
Hermosa, M., Grondona, I., Iturriaga, E.A.,
Diaz-Minguez, J., Castro, C., Monte, E. & Garcia-Acha, I. 2000. Molecular characterization and identification of biocontrol isolates of Trichoderma spp. Applied and Environmental Microbiology 66(5): 1890-1898.
Hsu, S. & Lockwood, J. 1975. Powdered chitin
agar as a selective medium for enumeration of actinomycetes in water and soil. Applied and Environmental Microbiology 29(3): 422-426.
Ilic, S., Konstantinovic,
S., Todorovic, Z., Lazic,
M., Veljkovic, V., Jokovic,
N. & Radovanovic, B. 2007. Characterization and antimicrobial activity of
the bioactive metabolites in streptomycete isolates. Microbiology 76(4): 421-428.
Ishikawa, J., Tsuchizaki, N., Yoshida, M., Ishiyama,
D. & Hotta, K. 2000. Colony PCR for detection of specific DNA
sequences in actinomycetes. Actinomycetologica 14(1): 1-5.
Jetiyanon, K. & Kloepper,
J.W. 2002. Mixtures of plant growth-promoting rhizobacteria for induction of systemic resistance against
multiple plant diseases. Biological Control 24(3): 285-291.
Jiang, C.L. & Xu, L.H. 1996. Diversity of aquatic actinomycetes in
lakes of the middle plateau, Yunnan, China. Applied and Environmental
Microbiology 62(1): 249-253.
Jones, C.R. & Samac,
D.A. 1996. Biological control of fungi causing alfalfa
seedling damping-off with a disease-suppressive strain of Streptomyces. Biological Control 7(2): 196-204.
Jukes, T. & Cantor, C. 1969. Evolution of protein molecules. In Mammalian Protein
Metabolism, edited by Munro, H. New York: Academic Press.
Kim, O.S., Cho, Y.J., Lee,
K., Yoon, S.H., Kim, M., Na, H., Park, S.C., Jeon,
Y.S., Lee, J.H. & Yi, H. 2012. Introducing EzTaxon-e: A prokaryotic
16S rRNA gene sequence database with phylotypes that represent uncultured species. International
Journal of Systematic and Evolutionary Microbiology 62(3): 716-721.
Kim, S.B., Falconer, C.,
Williams, E. & Goodfellow, M. 1998. Streptomyces thermocarboxydovorans nov. and Streptomyces thermocarboxydusnov., two moderately thermophilic carboxydotrophic species from soil. International
Journal of Systematic Bacteriology 1(4): 59-68.
Labeda, D., Goodfellow, M.,
Brown, R., Ward, A., Lanoot, B., Vanncanneyt,
M., Swings, J., Kim, S.B., Liu, Z. & Chun, J. 2012. Phylogenetic
study of the species within the family Streptomycetaceae. Antonie van Leeuwenhoek 101(1): 73-104.
Labeda, D. & Shearer, M.
1990. Isolation
of actinomycetes for biotechnological applications. In Isolation of Biotechnology Organisms from Nature, edited by Labeda, D., New York: McGraw Hill.
Lane, D.J. 1991. 16S/23S rRNA sequencing. In Nucleic Acid Techniques in
Bacterial Systematics, edited by Stackebrandt, E. & Goodfellow, M. Chichester, United Kingdom: John Wiley & Sons.
Links, J., Rombouts, J. & Keulen, P. 1957. The ‘Bulging Factor’, a fungistatic antibiotic produced by a Streptomyces strain,
with evidence of an active water-excreting mechanism in fungi. Journal of
General Microbiology 17(3): 596-601.
Locci, R. 1989. Streptomycetes and related genera. In Bergey’s Manual of Systematic Bacteriology, edited by Williams, S.T., Sharpe, M.E.,
Holt, J.G., Murray, R.G.E., Brenner, D.J., Krieg, N.R., Moulder,
J.W., Pfennig, N., Sneath, P.H.A. & Staley, J.T.,
Baltimore: Williams and Wilkins.
Marois, J. 1990. Biological control of diseases caused by Fusarium oxysporum.
In Fusarium Wilt of Banana, edited by Ploetz, R. California: APS Press.
Pakdeevaraporn, P., Wasee,
S., Taylor, P. & Mongkolporn, O. 2005. Inheritance of resistance to anthracnose
caused by Colletotrichum capsiciin Capsicum. Plant Breeding 124(2):
206-208.
Peres, N.A.R., Kuramae,
E.E., Dias, M.S.C. & De Souza, N.L. 2002. Identification and characterization of Colletotrichum spp. affecting fruit after
harvest in Brazil. Journal of Phytopathology 150(3): 128-134.
Saadoun, I., Hameed, K., Al-Momani, F., Malkawi, H., Meqdam, M. & Mohammad, M. 2000. Characterization and analysis of antifungal activity of
soil streptomycetes isolated from North Jordan. Egyptian
Journal of Microbiology 35(4): 463-471.
Saitou, N. & Nei,
M. 1987. The neighbor-joining method: A new
method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4(4): 406-425.
Satomi, T., Kusakabe,
H., Nakamura, G., Nishio, T., Uramoto,
M. & Isono, K. 1982. Neopeptins A and B, new
antifungal antibiotics. Agricultural and Biological Chemistry 46(10):
2621-2623.
Shirling, E.B. & Gottlieb, D. 1966. Methods
for characterization of Streptomyces species. International
Journal of Systematic Bacteriology 16(3): 313-340.
Skujins, J., Potgieter,
H. & Alexander, M. 1965. Dissolution of fungal cell walls by a streptomycete chitinase and β-(1→ 3) glucanase. Archives of Biochemistry and Biophysics 111(2):
358-364.
Taddei, A., Rodriguez, M.J., Marquez-Vilchez, E. & Castelli, C.
2006. Isolation and identification of Streptomyces spp. from Venezuelan soils: Morphological and biochemical studies. Microbiological
Research 161(3): 222-231.
Tamura, K., Dudley, J., Nei, M.
& Kumar, S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA)
software version 4.0. Molecular Biology and Evolution 24(8): 1596- 1599.
Than, P.P., Prihastuti, H., Phoulivong, S., Taylor, P.W.J. & Hyde, K.D. 2008. Chilli anthracnose disease caused by Colletotrichum species. Journal of Zhejiang University- Science B 9(10):
764-778.
Vikineswary, S., Nadaraj, P., Wong, W. & Balabaskaran, S. 1997. Actinomycetes from a tropical
mangrove ecosystem- Antifungal activity of selected strains. Asia-Pacific
Journal of Molecular Biology and Biotechnology 5(2): 81-86.
Wang, Y., Zhang, Z., Ruan, J.,
Wang, Y. & Ali, S. 1999. Investigation of actinomycete diversity in the tropical rainforests of
Singapore. Journal of Industrial Microbiology & Biotechnology 23(3):
178-187.
Xu, L., Li, Q. & Jiang, C. 1996. Diversity
of soil actinomycetes in Yunnan, China. Applied
and Environmental Microbiology 62(1): 244-248.
Yakoby, N., Zhou, R., Kobiler,
I., Dinoor, A. & Prusky,
D. 2001. Development of Colletotrichum gloeosporioides restriction enzyme-mediated integration mutants as biocontrol agents against anthracnose disease in avocado fruits. Phytopathology 91(2):
143-148.
Yeo, W.H., Kim, S., Kim, S.S., Yu, S. & Park, E. 1994. Isolation, physico-chemical properties,
and biological activity of new thiopeptide antibiotics, kimorexins. Journal of
Microbiology and Biotechnology 4: 349-353.
Yoshida, S., Shirata, A. & Hiradate, S. 2002. Ecological
characteristics and biological control of mulberry anthracnose. Japan
Agricultural Research Quarterly 36(2): 89-96.
Yun, H.K., Ahmad, A.H., Muid, S.
& Seelan, J.S.S. 2009. First
report of Colletotrichum spp. causing
diseases on Capsicum spp. in Sabah, Borneo, Malaysia. Journal
of Threatened Taxa 1(8): 419-424.
*Corresponding
author; email: ped.shahbazi@gmail.com |